Cacao Unigene version 1.0
Unigene Details
| Analysis Name | Cacao Unigene version 1.0 |
|---|---|
| Unigene Name | v1.0 |
| Software | cap3 ([21-Dec-2007]) |
| Source | cacao_est_NCBI_041612.fasta |
| Date constructed | 2021-05-08 |
| Description | This Unigene was constructed from 158,996 ESTs obtained from Genbank. Additional analysis for these contigs included BLAST searches against multiple protein databases to predict function, and identification of potential SSRs and SNPs. |
| Stats |
Number of reads: 136715 Number of contigs: 12530 Number of singlets: 28453 |
| Organisms | Theobroma cacao |
Downloads
| Orignal EST sequences from NCBI (158,996 sequences) | cacao_est_NCBI_041612.fasta |
| Filtered and trimmed EST sequences (136,715 sequences) | T. cacao.trimmedESTs.fasta |
| Contigs from CAP3 assembly (12,530 contig sequences) | T. cacao.cap.contigs |
| Ace file from CAP3 assembly | T. cacao.cap.ace |
| SSRs found in contigs (with primer predictions) | T. cacao_ssrReport.xls |
| SNPs predicted from contigs (with primer predictions) | T. cacao_snpReport.xls |
T. Cacao unigene v1.0 contigs blastx vs protein databases. Best hit reports in Excel |
|
| BLAST of contigs to UniProtKB/Swiss-Prot (973KB) | T. cacao_blastx_Swiss-Prot.xlsx |
| BLAST of contigs to UniProtKB/TrEMBL (1.4MB) | T. cacao_blastx_TrEMBL.xlsx |
| BLAST of contigs to TAIR10 Arabidopsis proteins (1.4MB) | T. cacao_blastx_TAIR10.xlsx |
| BLAST of contigs to Prunus persica (peach) v1.0 proteins (963KB) | T. cacao_blastx_peach.xlsx |
| BLAST of contigs to Vitis vinifera (grape) proteins (1.1MB) | T. cacao_blastx_grape.xlsx |
| BLAST of contigs to Populus trichocarpa (poplar) v2.0 proteins (996KB) | T. cacao_blastx_poplar.xlsx |
Resources
