Program blastn blastp blastx tblastn tblastx Database cacao_v1.1_genome_sequence cacao_v1.1_gene_transcripts cacao_v1.1_gene_peptides cacao_v1.1_gene_cds cacao_v0.9_genome_sequence cacao_v0.9_gene_transcripts cacao_v0.9_gene_peptides cacao_dbest_2012_cap3P90.unigenev1.0.fasta cacao_dbest_2012_cap3P90_contigs.fasta cacao_dbest_2012.fasta
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0000001 0.000001 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options: